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ArrayMiner - ClassMarker Programmatically isolate similarities between scattered classes of genes. Expression driven. Utilizes a voting method along with a k-Nearest-Neighbors classification. Very rich graphical interface. Samples of an unknown class are possible given enough http://www.optimaldesign.com/ArrayMiner/ClassMarker.htm Optimaldesign.com  ~   Site Info   Whois   Trace Route   RBL Check   UMDHMM and other statistical programs This tool implements Hidden Markov Models and application to part-of-speech tagging. Also available; a multivariate hypothesis testing software for gaussian data, and a groundtruth/metadata editing and visualizing toolkit for OCR. [GPL] http://www.kanungo.com/software/software.html Kanungo.com  ~   Site Info   Whois   Trace Route   RBL Check   BNet EngineKit A developer toolkit for researchers and engineers to embed belief networks in software applications. Nice online demo. [Commercial] http://www.cra.com/commercial-products-services/bnet-engine-kit.asp Cra.com  ~   Site Info   Whois   Trace Route   RBL Check   Pfam: Database of Protein Families and HMMs A large collection of multiple sequence alignments and trained hidden Markov models covering many common protein domains. Alignments are included as well as models for 8296 protein families, based on the Swissprot 48.9 and SP-TrEMBL 31.9 protein sequenc http://pfam.janelia.org/ Janelia.org  ~   Site Info   Whois   Trace Route   RBL Check   Fully Complex Machine Learning Algorithm: ELM Treatise on a newly discovered algorithm for feedforward neural network, ELM. Complete performance evaluation along with discussions in PDF format. [Free] http://www.ntu.edu.sg/home/egbhuang/C-ELM.pdf Ntu.edu.sg  ~   Site Info   Whois   Trace Route   RBL Check   Machine Learning Repository Machine language tools including inductive systems (i.e. ILP and others), and other ML related links. http://scalab.uc3m.es/~dborrajo/ml-systems/ Uc3m.es  ~   Site Info   Whois   Trace Route   RBL Check   Machine Learning and Inference Laboratory Downloadable group of programs comprising the EMERALD machine learning system, (Experimental Machine Example-based Reasoning and Learning Disciple) integrates five modules (e.g. or 'robots'), each displaying a capability for machine learning, visualiz http://www.mli.gmu.edu/msoftware.html Gmu.edu  ~   Site Info   Whois   Trace Route   RBL Check   Self-Taught: Software That Learns By Doing Short article on self-modifying software touching on co-training, partial-programming, and genetic programming (GP) methods of problem solving. [FREE] http://www.computerworld.com/softwaretopics/software/story/0,10801,108320,00.html Computerworld.com  ~   Site Info   Whois   Trace Route   RBL Check   LibML A machine learning library. New implementations of various machine learning algorithms. [GPL] http://savannah.nongnu.org/projects/libml/ Nongnu.org  ~   Site Info   Whois   Trace Route   RBL Check   SUBDUE: Graph Based Knowledge Discovery A program which discovers interesting and repetitive subgraphs in labeled graph representations using the minimum description length principle. Includes applications to molecular biology. [Free] http://ailab.wsu.edu/subdue/ Wsu.edu  ~   Site Info   Whois   Trace Route   RBL Check