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Universal Report
A generic code analysis and documentation tool to easily analyse and generate a structured and formatted overview of a given set of program codes in Basic, C, C++, COBOL, Fortran, Java, Matlab, Pascal, Visual Basic, Borland C++ Builder, Delphi, Kylix, Vi
http://www.omegacomputer.com/
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Doxygen
A documentation system for C++, C, Java and IDL. It generates Latex, HTML, RTF, Postscript and Unix man page outputs from a set of documented source files. [Open Source, GPL]
http://www.stack.nl/~dimitri/doxygen/
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HelpCruiser
Destined for creation documents in various formats such as HTML, CHM, PDF, RTF and XML. It's optimized for solving tasks, that appear during the process of creation help files, descriptions and manuals. [Commercial]
http://www.helpcruiser.com
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Visustin
Visualize source code of many programming languages with flow charts. Help in documenting and reviewing algorithms.
http://www.aivosto.com/visustin.html
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Adobe RoboHelp
Training and consulting for RoboHelp family of products. Offers support options, product specifications, and ordering information for this line of help authoring tools.
http://www.adobe.com/products/robohelp/
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Highlight
Hosts a tool which helps to format and colour source code of over 120 supported programming languages. Coloured output is available in HTML, XHTML, RTF, TeX, LaTeX and XML format.
http://www.andre-simon.de/
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