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Top / Science / Biology / Bioinformatics / Online_Services / Protein_Analysis /

COLORADO3D Service to aid visualisation of potential errors in protein structures. Free for academic users. http://asia.genesilico.pl/colorado3d/ Genesilico.pl  ~   Site Info   Whois   Trace Route   RBL Check   SSM Provides interactive service for matching protein structures in 3D and looking for structural homologues in PDB and SCOP databases, as well as in user-uploaded sets of structures. http://www.ebi.ac.uk/msd-srv/ssm Ebi.ac.uk  ~   Site Info   Whois   Trace Route   RBL Check   MSDmotif Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White. http://www.ebi.ac.uk/msd-srv/msdmotif/ Ebi.ac.uk  ~   Site Info   Whois   Trace Route   RBL Check   TRANSFAC-The Transcription Factor Database A compilation of transcriptional regulatory protein factors and their cognate gene promoter elements along with DNA sequence search and analysis programs - from GBF, Braunschweig, Germany. http://www.gene-regulation.com/pub/databases.html#transfac Gene-regulation.com  ~   Site Info   Whois   Trace Route   RBL Check   MODBASE A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites, SNP annotation, and protein-protein interactions. http://salilab.org/modbase Salilab.org  ~   Site Info   Whois   Trace Route   RBL Check   Wurst A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics. http://www.zbh.uni-hamburg.de/wurst Uni-hamburg.de  ~   Site Info   Whois   Trace Route   RBL Check   DisEMBL Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein. http://dis.embl.de Embl.de  ~   Site Info   Whois   Trace Route   RBL Check   NUMODs Motifs Finder Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein sequences http://bioinfo.weizmann.ac.il/~naaman1/NUMODs/ Weizmann.ac.il  ~   Site Info   Whois   Trace Route   RBL Check   Isoelectric Point Estimator Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications. http://www.nihilnovus.com/Palabra.html Nihilnovus.com  ~   Site Info   Whois   Trace Route   RBL Check   Entelechon Backtranslation tool Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet. http://www.entelechon.com/bioinformatics/backtranslation.php Entelechon.com  ~   Site Info   Whois   Trace Route   RBL Check