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BIOBASE
The focus of the GBF project "Molecular Bioinformatics of Gene Regulation" are regulatory genomic signals and regions that govern transcriptional control based on TRANSFAC - The Transcription Factor Database. It compiles data about gene regulat
http://www.gene-regulation.com/
Gene-regulation.com ~
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ProteinLounge
Bioinformatics portal which integrates protein information and many databases and research tools useful for researchers and students. Subscription based service.
http://www.proteinlounge.com
Proteinlounge.com ~
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PlasMapper
Online service to generate annotated plasmid maps up to 20 kbp. Outputs in PNG, JPG, SVG or SVGZ format.
http://wishart.biology.ualberta.ca/PlasMapper/index.html
Ualberta.ca ~
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Bioverse
Provides a framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds.
http://bioverse.compbio.washington.edu
Washington.edu ~
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Mulan
Performs single-coverage local multiple DNA sequence alignments of finished and draft-quality genome sequences. It also provides with an option to predict transcription factor binding sites evolutionarily conserved across multiple species.
http://mulan.dcode.org/
Dcode.org ~
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ProPred-I
An online service for predicting MHC binding regions in antigens. It also offers the proteasomal and immunoproteasomal filters to improve the applicability of results.
http://www.imtech.res.in/raghava/propred1
Imtech.res.in ~
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ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
http://www.paralign.org/
Paralign.org ~
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