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BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
http://www.biophp.org
Biophp.org ~
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NeoBio
An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
http://neobio.sourceforge.net
Sourceforge.net ~
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InterMine
A general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
http://www.intermine.org
Intermine.org ~
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EST2uni
A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
http://www.melogen.upv.es/genomica/web_estpipe/index.php
Upv.es ~
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Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems,
http://bioinformatics.org/jSight/
Bioinformatics.org ~
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JCell
A Java based framework to reconstruct genetic interactions from microarray data.
http://www-ra.informatik.uni-tuebingen.de/software/JCell/
Uni-tuebingen.de ~
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