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HyperGraph
HyperGraph visualizes hyperbolic trees and graphs. It is used to show topic maps, sitemaps or hierarchies.
http://hypergraph.sourceforge.net
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Graph Magics
A tool for graph theory, having a generator and offering various algorithms: shortest paths, network flows, maximal clique, optimal coloring etc.
http://www.graph-magics.com
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GRINEdit - "KAYUKA" Tools
Open source visualization tools and library for graphs, relations, interactions and networks.
http://www.nishiohirokazu.org/grinedit/
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Nodes3D
Nodes3D is an open-source, platform independent, interactive 3D graph visualization system based on C and OpenGL.
http://brainmaps.org/index.php?p=desktop-apps-nodes3d
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GoDiagram - .NET and Java diagram components
Add custom interactive diagrams to .NET and Java user interfaces, including networks, workflows, flowcharts, org charts, and design tools. Optional automatic layout and instruments.
http://www.nwoods.com/
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GUESS: The Graph Exploration System
An Open Source program written in Jython to visualize graphs and perform operations on them. Provides a Jython based scripting language with syntactic sugar for operating on graphs.
http://graphexploration.cond.org/
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gteditor
A graph editor and tool for sketching graphs and performing some common graph operations developed in Java.
http://code.google.com/p/gteditor/
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OGDF - The Open Graph Drawing Framework
OGDF is an open-source C++ library containing a wealth of data structures and algorithms for graph drawing, including sophisticated features like SPQR-trees, planarity tests, graph planarization, and orthogonal layout.
http://www.ogdf.net
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Carrier-class network topology swing components
TWaver is a complete suite of Java graphic components for telecommunication operations support systems (OSS).
http://www.servasoftware.com
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Found in Space
Provides a 3-dimensional relation display. It uses data of nodes and edges in order to visualize and better understand complex, relational business data.
http://continentalsoftware.com/found-in-space/
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