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Phrap, HMMER, cross_match, bioinformatics, crossmatch, DNA assembly, DNA sequence search, University of Washington, Hmmer,hidden markov, hmmpfam, smith-waterman, double-affine, double affine, smith waterman, BLAST, HMM, blastn, blastp, blastx, tblastn, tblastx, Washington University, Eddy, parallel computing, TimeLogic, Geospiza, Montry, SPSOFT
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