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pyCGNS
Python interface for CGNS (data standard for computational fluid dynamics). [Open Source, GPL]
http://elsa.onera.fr/CGNS/releases/
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PyDaylight
Turns the Daylight toolkit into a rapid application development system for chemical information by providing a full Python interface. [Open Source, LGPL]
http://sourceforge.net/projects/pydaylight/
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Pmv, ADT and ViPEr
Python software from the Molecular Graphics Lab (MGL) of the Scripps Research institute. [Free for non-commercial use]
http://www.scripps.edu/~sanner/python/
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The Biopython Project
Freely available Python tools for computational molecular biology.
http://www.biopython.org/
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