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Seqool
Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods.
http://www.biossc.de/seqool/index.html
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PeakTrace Basecaller
Software for base and quality scoring ABI DNA sequencing traces. Works with all ABI DNA sequencers including the ABI 377, ABI 310, ABI 3700, ABI 3100, ABI 3130 and ABI 3730.
https://www.nucleics.com/peaktrace/
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Phenosystems
Software company developing user friendly tools for the molecular genetics community. Provides details of products, R and D collaborations and news.
http://www.phenosystems.com
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The Bio Log
DNA Baser sequence aligner is a software package providing automatic DNA sequence assembly functions, contig editing functions and chromatogram viewing and editing.
http://www.thebiolog.com
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OpenBiomind
OpenBiomind is an open source toolkit for analysis of gene expression, SNP and other biological datasets using advanced machine learning and pattern mining techniques, and includes traditional clustering, hybrid clustering, and other techniques.
http://code.google.com/p/openbiomind/
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Gene Expression Open Source System
Open source database and analysis package used to store and analyze gene expression data. Includes microarray center workflow management, and researcher tools to analyze final data.
http://va-genex.sourceforge.net/
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STRand
Open-source program, provided by Davis' Veterinary Genetics Lab at the University of California, to automate or speed up the analysis of DNA fragment length polymorphism samples.
http://www.vgl.ucdavis.edu/informatics/strand.php
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HyPhy: Hypothesis Testing Using Phylogenies
Free multiplatform software package intended to perform maximum likelihood analyses of genetic sequence data.
http://www.hyphy.org
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Binary State Pattern Clustering
BSPC is a method for pattern discovery in gene expression microarray data, that makes use of a perspective that interprets gene activity as being in two or more discrete functional states.
http://compbio.charite.de/index.php/BSPC.html
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DNA Chromatogram Explorer
Freeware program that can automatically view, trim and convert all chromatogram files (SCF, ABI, AB1, AB) in the current folder.
http://www.dnabaser.com/download/chromatogram-explorer/index.html
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