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MuStaR Sequence Variant Database Software
Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained.
http://www.hgu.mrc.ac.uk/Softdata/Mustar/
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Hands on Genetics
Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows.
http://www.handsongenetics.com
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Alice Software
Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
http://www.alicesoftware.com/
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Genetic Linkage Analysis
Offers links and other resources for genetic analysis software from the Rockefeller University.
http://linkage.rockefeller.edu/
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GENtle
GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
http://gentle.magnusmanske.de/
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MapMakerDrawer
Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
http://www.emboss.co.nz/products.php?pid=2
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Genetic Network Maps as Java Applets
Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
http://www.bio.davidson.edu/courses/genomics/mirror/Urchin/u0maps.htm
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CREME: Cis-REgulatory Module Explorer
Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments.
http://creme.dcode.org/
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Broad Institute Genetics Software
Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection.
http://www.broad.mit.edu/tools/software.html
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The Sequence Manipulation Suite
The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
http://bioinformatics.org/sms2/
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