Directory: Top/Science/Biology/Biochemistry_and_Molecular

Top / Science / Biology / Biochemistry_and_Molecular_Biology / Biomolecules / Software /

EGO
A parallel program for molecular dynamics simulations of biomolecules.
http://www.lrz-muenchen.de/~heller/ego/
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Pande Group
Folding simulations for fusion peptides, proteins and RNA with aim of predicting structure from genome by research at Stanford University, California.
http://www.stanford.edu/group/pandegroup/
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Highlights of Biochemistry
Molecular structures are made visible, dependent on Chime scripts at the Faculty of Biology, University of Hamburg, Germany.
http://www.biologie.uni-hamburg.de/lehre/bza/eanfang.htm
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ChemVis
Visualization of physico-chemical structures in VML, from research at the Universities of Stuttgart and Erlangen in Nürnberg, Germany.
http://www2.chemie.uni-erlangen.de/projects/ChemVis/
Uni-erlangen.de ~ Site Info Whois Trace Route RBL Check

PDB Viewer
Downloads for Windows and Linux, to visualize three dimensional structure of macromolecules, using protein data bank format for atom coordinates, from ex-student at University of Manchester, England.
http://www.geocities.com/pdbviewer/
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Sesame Project
Protein structure-function software in multiple modules, maintained at the University of Wisconsin, Madison.
http://www.sesame.wisc.edu/
Wisc.edu ~ Site Info Whois Trace Route RBL Check

IMB Jena Image Library of Biological Macromolecules
Resource for visualization and analysis of 3D-biopolymer structures; proteins, nucleic acids, carbohydrates, and small molecule ligands. Combines experimental and computer generated models, maintained in Germany.
http://www.imb-jena.de/IMAGE.html
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Jay Ponder Lab
Graphical user interface to suites of molecular modeling tools, providing an integrated environment for engineering applications. Contacts for the group at Washington University School of Medicine in Saint Louis, Missouri.
http://dasher.wustl.edu/
Wustl.edu ~ Site Info Whois Trace Route RBL Check

RAMP
Public domain suite of programs to aid in the modeling of protein three-dimensional structures. Tested on Linux and Unix.
http://software.compbio.washington.edu/ramp/ramp.html
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WhatIf
Protein structure analysis software for Linux, SGI/IRIX, Windows NT. Performs mutant prediction, structure verification, homology modeling and molecular visualization. Links to the documentation in HTML. Commercial software.
http://www.cmbi.ru.nl/whatif/
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