Web Site Information :.

• Site Info
• Whois
• Traceroute
• RBL Check
• What's My IP?

Top / Science / Biology / Biochemistry_and_Molecular_Biology / Biomolecules / Software /

X-plor Archives Forum for 3D macromolecular structure determination. Includes links to other Biosci/Bionet newsgroups, maintained at Indiana University, Bloomington. http://www.bio.net/hypermail/X-PLOR/ Bio.net  ~   Site Info   Whois   Trace Route   RBL Check   NAMD A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code. http://www.ks.uiuc.edu/Research/namd/ Uiuc.edu  ~   Site Info   Whois   Trace Route   RBL Check   AMMP A free program suite for molecular mechanics, dynamics and modeling with some special features like docking or ab initio DFT calculations. Runs under Linux/Unix and Win9x. The site provides access to the documentation and offers on-line tutorials. http://www.cs.gsu.edu/~cscrwh/ammp/ammp.html Gsu.edu  ~   Site Info   Whois   Trace Route   RBL Check   EGO VIII A program to perform molecular dynamics simulations on parallel as well as on sequential computers. http://www.lrz-muenchen.de/~heller/ego/egointro.html Lrz-muenchen.de  ~   Site Info   Whois   Trace Route   RBL Check   B: On-line Molecular Modeling "B" (formerly known as Biomer) is a Java-based molecular modeling program for small organic molecules and biopolymers. Supports nucleic acids (DNA/RNA), polypeptides, polysaccharides, the AMBER force field, geometry optimization, simulated an http://www.scripps.edu/case/Biomer/ Scripps.edu  ~   Site Info   Whois   Trace Route   RBL Check   AutoDock A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. http://www.scripps.edu/pub/olson-web/doc/autodock/ Scripps.edu  ~   Site Info   Whois   Trace Route   RBL Check   TINKER A free molecular modeling package for molecular mechanics and dynamics, with some special features for biopolymers. Distributed as source code and as binaries for Windows9x, Linux and Mac. http://dasher.wustl.edu/tinker/ Wustl.edu  ~   Site Info   Whois   Trace Route   RBL Check   Folding@home It is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases. http://folding.stanford.edu/ Stanford.edu  ~   Site Info   Whois   Trace Route   RBL Check   Amber A general purpose molecular mechanics and molecular dynamics package with the capability to compute free-energy changes. http://amber.ch.ic.ac.uk/ Ic.ac.uk  ~   Site Info   Whois   Trace Route   RBL Check   YASARA (Yet Another Scientific Artificial Reality Application) is an interactive real-time molecular dynamics program. http://www.yasara.org/ Yasara.org  ~   Site Info   Whois   Trace Route   RBL Check