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Friend An integrated multiple structure visualization and multiple sequence alignment application. Available for Windows, Linux. http://mozart.bio.neu.edu/friend/friend.html Neu.edu  ~   Site Info   Whois   Trace Route   RBL Check   DNA Counter Small free Windows program to calculate nucleotides frequencies in DNA sequences. http://www.dnabaser.com/download/DNA-Counter/index.html Dnabaser.com  ~   Site Info   Whois   Trace Route   RBL Check   FASTA Converter Free Windows tool for merging multiple FASTA files into a single FASTA file. http://www.dnabaser.com/download/FASTA-Converter/index.html Dnabaser.com  ~   Site Info   Whois   Trace Route   RBL Check   Biological Concept Diagram Editor A tool designed for efficient knowledge and data capture from electronic resources for sharing, mining and presentation purposes. http://arrayanalysis.mbni.med.umich.edu/draw/ Umich.edu  ~   Site Info   Whois   Trace Route   RBL Check   KoriBlast Commercial graphical software for Blast searches. http://www.korilog.com/products/improving-NCBI-BLAST.php Korilog.com  ~   Site Info   Whois   Trace Route   RBL Check   AlmaKnowledgeServer Text mining tool for genomics, proteomics platforms and drug discovery. http://www.timelogic.com/aks/index.html Timelogic.com  ~   Site Info   Whois   Trace Route   RBL Check   PhyloSort A Java tool to sort phylogenetic trees by searching for user-specified subtrees that contain a monophyletic group of interest defined by operational taxonomic units. http://phylosort.sourceforge.net/ Sourceforge.net  ~   Site Info   Whois   Trace Route   RBL Check   NEXML: Phylogenetic Data in xml Exchange standard for representing phylogenetic data, inspired by the commonly used NEXUS format but more robust and easier to process. http://www.nexml.org Nexml.org  ~   Site Info   Whois   Trace Route   RBL Check   Bioinformatics Tools in Haskell A bioinformatics library implemented in Haskell, including various utilities based on it. http://malde.org/~ketil/ Malde.org  ~   Site Info   Whois   Trace Route   RBL Check   HMMER Profiles protein sequence data using hidden Markov models of a statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. http://hmmer.janelia.org/ Janelia.org  ~   Site Info   Whois   Trace Route   RBL Check