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sys-bio.org Software for simulating metabolic, signal and genetic networks. Home of SBW, Jarnac, JDesigner and winSCAMP. http://sbw.kgi.edu/ Kgi.edu  ~   Site Info   Whois   Trace Route   RBL Check   MAFFT Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies. http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ Kyushu-u.ac.jp  ~   Site Info   Whois   Trace Route   RBL Check   GeneRunner A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product. http://www.generunner.net Generunner.net  ~   Site Info   Whois   Trace Route   RBL Check   Unipro UGENE: Integrated Bioinformatics Tools Free cross-platform bioinformatics software package for DNA and protein sequence analysis. http://ugene.unipro.ru Unipro.ru  ~   Site Info   Whois   Trace Route   RBL Check   gsuffix C-language implementations of generalized suffix-based algorithms useful for searching for string patterns in sets of input strings and is released under the terms of the LGPL license. http://compbio.charite.de/index.php/gsuffix.html Charite.de  ~   Site Info   Whois   Trace Route   RBL Check   Biomax BioXM Knowledge Management Environment Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models as an extendible network of interrelated concepts. http://www.biomax.com/products/bioxm.php Biomax.com  ~   Site Info   Whois   Trace Route   RBL Check   CentiBiN: Centralities in Biological Networks Application for the calculation and visualization of centralities for biological networks. http://centibin.ipk-gatersleben.de/ Ipk-gatersleben.de  ~   Site Info   Whois   Trace Route   RBL Check   Biochemfusion: Enabling Biochemformatics Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures. http://www.biochemfusion.com Biochemfusion.com  ~   Site Info   Whois   Trace Route   RBL Check   Cytoscape Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualizatio http://www.cytoscape.org/ Cytoscape.org  ~   Site Info   Whois   Trace Route   RBL Check   Automated Codon Usage Analysis Software ACUA is a freeware VB based interface for Insilico codon analysis. It provides nucleotide analysis, statistical codon analysis and positional nucleotide analysis. It presents the results in spreadsheets which can be utilized for further statistical analy http://www.bioinsilico.com/acua Bioinsilico.com  ~   Site Info   Whois   Trace Route   RBL Check