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RasMol
Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for Windows, Macintosh, and UNIX.
http://www.umass.edu/microbio/rasmol/
Umass.edu ~
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Jmol
Open source molecule viewer written in Java. It runs as a standalone application and as a web browser applet.
http://jmol.sourceforge.net/
Sourceforge.net ~
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Viewmol
An open-source graphical front end for computational chemistry programs such as Gaussian, Gamess, and Mopac. Available for Linux, FreeBSD, Mac OS X, and other Unices.
http://viewmol.sourceforge.net/
Sourceforge.net ~
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PovChem
A chemical visualization and illustration program. Reads PDB files and exports POV-Ray files for producing high-resolution ray-traced images. Available for Windows, Linux, Mac, and SGI.
http://www.chemicalgraphics.com/PovChem/
Chemicalgraphics.com ~
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gOpenMol
A free program for the analysis of molecular dynamics trajectories and the display of molecular orbitals, electron densities and electrostatic potentials. Supports many file formats like the GaussianXX, Jaguar, CHARMM, and AMBER.
http://www.csc.fi/gopenmol/
Csc.fi ~
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SweetMollyGrace
A suite of freeware tools for automating work of rendering and animating molecules. Generates high quality images of molecules from PDB, XYZ, or molfiles using raytracing tools (Povray and Raster3D).
http://rodomontano.altervista.org/engSweetMG.php
Altervista.org ~
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ChemCraft
Windows-based program for visualization of molecular structures, vibrational modes, molecular orbitals, energy gradient and other properties from log files produced by the GAMESS and Gaussian packages.
http://www.chemcraftprog.com
Chemcraftprog.com ~
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MOLDEN
Pre- and post-processing program for molecular and electronic structure, with Z-matrix editor, electron density visualization, and molecule animations. Available for Unix and VMS; free for academic use.
http://www.cmbi.ru.nl/~schaft/molden/molden.html
Ru.nl ~
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