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Protein Explorer
A web-based viewer for the 3D structures of proteins, DNA and RNA. Requires Netscape and the Chime plugin, which is only available for Windows9x.
http://www.umass.edu/microbio/chime/pe/protexpl/
Umass.edu ~
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MOLMOL
A free program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with emphasis on structures determined by NMR. Runs on UNIX and Windows NT/95. The site offers an online tutorial.
http://hugin.ethz.ch/wuthrich/software/molmol/index.html
Ethz.ch ~
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Facio
3D-Molecular Modeling Software, available at no charge for the Windows platform. Has functions for visualization of biomolecules and results from GAMESS QM calculations, and for aligning and modifying structures.
http://www1.bbiq.jp/zzzfelis/Facio.html
Bbiq.jp ~
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UCSF Chimera
Highly extensible, interactive molecular graphics program. It is the successor to UCSF Midas and MidasPlus. Free of charge for academic, government, non-profit, and personal use.
http://www.cgl.ucsf.edu/chimera/
Ucsf.edu ~
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Nanotube Modeler
A program for generating and visualizing the xyz-coordinates for nanotubes, nanocones, nanosheets, and fullerenes. For Windows; free demo version available.
http://jcrystal.com/products/wincnt/
Jcrystal.com ~
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Swiss-PdbViewer
A free program for viewing and analyzing several proteins at the same time. Some energy minimzation and homology modeling features are also included.
http://www.expasy.org/spdbv/
Expasy.org ~
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PyMOL
A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences.
http://pymol.sourceforge.net/
Sourceforge.net ~
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