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OpenScience
A directory of links to free molecule viewers and editors.
http://www.openscience.org/links.php?section=56
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DTMM
Desktop Molecular Modeller: A simple program for constructing and viewing small molecules and proteins in 3D with some energy calculation/minimization capabilities. Run on any PC with Windows 9X/NT. Commercial software.
http://www.polyhedron.co.uk/dtmm/dtmm.html
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Grasp
A visualization and analysis program useful for the display and manipulation of the surfaces of molecules and their electrostatic properties. Commercial software.
http://honiglab.cpmc.columbia.edu/grasp/
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OpenRasMol
Provided for the convenience of users and software developers of open source versions of RasMol.
http://www.openrasmol.org/
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VMD
A free program for visualization and analysis of biological systems such as proteins, nucleic acids, and lipid bilayer assemblies.
http://www.ks.uiuc.edu/Research/vmd/
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Molymod Molecular Models
Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix), semiconductors and crystal lattice structures.
http://www.molecular-model.com/
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Labquip
Plastic molecular models for constructing polypeptides and DNA molecules.
http://www.labquip.clara.net/index.html
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Historical Molecular Graphics
Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.
http://www.umass.edu/molvis/francoeur/movgallery/moviegallery.html
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Ymol
A free molecular visualization and animation program for the X window system. Creates images and movies, using either the built in renderer or povray. Still alpha.
http://www.teoroo.mkem.uu.se/daniels/ymol.html
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ProteinScope
ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
http://www.proteinscope.com
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