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Review of Molecular Modelling Programs
Reviews, screenshots, and table of features comparing over a dozen freely available molecular modelling and viewing programs.
http://www.marcsaric.de/
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Molegro Molecular Viewer
A free cross-platform application for visualization and analysis of molecules and molecular docking results.
http://www.molegro.com/mmv-product.php
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Avogadro
Open source advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers flexible rendering and a powerful plugin architecture.
http://avogadro.openmolecules.net/
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MdView
Molecular visualization software specialized for generating animations from molecular dynamics simulations.
http://www.geocities.com/thomas_r_bonner/vis/vis.htm
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Jamberoo: Cross Platform Molecular Editor
Free cross-platform application for displaying, analyzing, editing, converting and animating molecular systems.
http://sf.anu.edu.au/%7evvv900/cct/appl/jmoleditor/index.html
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